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Functional enrichment analysis of three Alzheimer's disease genomewide association studies identities DAB1 as a novel candidate liability/protective gene 期刊论文

编号：

bfe06342-46a8-415a-96d9-b4f88c8871ca
作者：

Gao, Hui^[1,2] Tao, Yu^[1,2] He, Qin^[1,2] Song, Fan^[1] Saffen, David^[1,2,3]
语种：

English
期刊：

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS ISSN：0006-291X 2015 年 463 卷 4 期 (490 - 495) ; AUG 7
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关键词：

Alzheimer's disease Genome-wide association study Database for Annotation Visualization and Integrated Discovery
摘要：

To explore genetic contributions of Alzheimer's disease (AD) at the level of biological terms and pathways, we analyzed three Caucasian population-based genome-wide association study datasets (TGEN_ND, GeneADA and NIA_LOAD) using the Database for Annotation, Visualization and Integrated Discovery (DAVID). This analysis identified 4 annotation terms ("Fibronectin type III-like fold," "Cell adhesion," "Cell motion" and "Ig-like-C2-type 3") and 17 genes that associated with AD susceptibility in two or more of the GWAS datasets. Ten of these genes, have previously been identified as candidate AD liability genes in genetic association studies (ACT, COL11A1) or encode proteins that function in biological systems or pathways previously implicated in AD (BARHL2, CSF3R, DAB1, HMCN1, LEPR, PTPRF, PXDN, TNR). Among these, DAB1 (Dab, reelin signal transducer, homolog 1) was of particular interest, since it encodes a protein that functions downstream from reelin, a signaling pathway previously identified as protective in AD. Multiple linear regression analysis of correlations between brain DAB1 mRNA expression and SNP genotype using data from the "BrainCloud" database identified five SNPs within the DAB1 locus that correlated with mRNA expression in human dorsolateral prefrontal cortex. Analysis of predicted levels of DAB1 mRNA expression based on genotype combinations present in AD cases and controls vs. the log(10)-transformed odds ratios for AD diagnosis, revealed statistically significant correlations in one of the GWAS datasets (GenADA), with high DAB1 mRNA expression correlating with AD protection. Multidimensional scaling (MDS) analysis of cases and controls in the three GWAS, revealed genetic differences between GenADA and TGEN_ND/NIA_LOAD, which were similar to each other. To our knowledge, this study is the first to provide genetic evidence for DAB1 as a candidate AD liability/protection gene, although the strength of the contribution of DAB1 may differ among populations. (C) 2015 Elsevier Inc. All rights reserved.
推荐引用方式
GB/T 7714：

Gao Hui,Tao Yu,He Qin, et al. Functional enrichment analysis of three Alzheimer's disease genomewide association studies identities DAB1 as a novel candidate liability/protective gene [J].BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS,2015,463(4):490-495.
APA：

Gao Hui,Tao Yu,He Qin,Song Fan,&Saffen David.(2015).Functional enrichment analysis of three Alzheimer's disease genomewide association studies identities DAB1 as a novel candidate liability/protective gene .BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS,463(4):490-495.
MLA：

Gao Hui, et al. "Functional enrichment analysis of three Alzheimer's disease genomewide association studies identities DAB1 as a novel candidate liability/protective gene" .BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 463,4(2015):490-495.

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