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Identification of potential gene targets in systemic vasculitis using DNA microarray analysis 期刊论文

编号：

f7b21538-75b1-4476-b8e4-557bbac23e6f
作者：

Feng, Yiwen^[1];Zheng, Miao^[1];Gan, Shujie^[1];Zhang, Lei^[1];Wan, Zhong^[1];Zhang, Yanping^[1];Qian, Qin^[1];Tang, Jingdong(汤敬东)*^[1,2]
语种：

English
期刊：

MOLECULAR MEDICINE REPORTS ISSN：1791-2997 2017 年 15 卷 6 期 (3665 - 3673) ; JUN
收录：
关键词：

systemic vasculitis differentially expressed genes protein-protein interaction network transcriptional factors
摘要：

The present study aimed to identify the involvement of critical genes in systemic vasculitis, to gain an improved understanding of the molecular circuity and to investigate novel potential gene targets for systemic vasculitis treatment. The dual-color cDNA microarray data of GSE16945, consisting of peripheral mononuclear blood cell specimens from 13 patients with systemic vasculitis and 16 healthy controls, was downloaded from the Gene Expression Omnibus database. Differentially expressed genes (DEGs) were screened in systemic vasculitis compared with controls using BRB ArrayTools, followed by the construction of a protein-protein interaction (PPI) network using the clusterProfiler package, and significant functional interaction (FI) module selection. Furthermore, transcriptional factors (TFs) among the identified DEGs were predicted and a transcriptional regulation network was constructed. A total of 173 up-and 93 downregulated genes were identified, which were mainly associated with immune response pathways. FBJ murine osteosarcoma viral oncogene homolog (FOS), ubiquitin B (UBB), signal transducer and activator of transcription 1 (STAT1) and MX dynamin-like GTPase 1 (MX1) were identified as hub proteins in the PPI network. Furthermore, UBB, FOS, and STAT1 were hub proteins in the three identified FI modules, respectively. In total, nine TFs were predicted among the DEGs. Of the DEGs that were predicted to be TFs, STAT1, v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog B (MAFB) and tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein Z (YWHAZ), which interacted with each other, were identified to regulate further DEGs as target genes. Various genes, including FOS, UBB, MX1, STAT1, MAFB, and YWHAZ may be potential targets useful for the treatment of systemic vasculitis.
推荐引用方式
GB/T 7714：

Feng Yiwen,Zheng Miao,Gan Shujie, et al. Identification of potential gene targets in systemic vasculitis using DNA microarray analysis [J].MOLECULAR MEDICINE REPORTS,2017,15(6):3665-3673.
APA：

Feng Yiwen,Zheng Miao,Gan Shujie,Zhang Lei,&Tang Jingdong.(2017).Identification of potential gene targets in systemic vasculitis using DNA microarray analysis .MOLECULAR MEDICINE REPORTS,15(6):3665-3673.
MLA：

Feng Yiwen, et al. "Identification of potential gene targets in systemic vasculitis using DNA microarray analysis" .MOLECULAR MEDICINE REPORTS 15,6(2017):3665-3673.

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